Thanks guys, some good ideas. New plan: I will try and get engine 2 going. If that runs well, I will try switching the carbs, if that works I will re-clean carb #3. I suspect carb #3 on engine 2 is just as bad as the one on the first engine, they have lived the same life.
First I think I will try switching the coil packs over from engine 2 to 1, that is a pretty easy switch to make and should rule out bad coil problems.
Swapping the carbs is actually quite involved, have to unbolt the intake runners from the head, have to pull the whole intake/carbs/air filter assembly off as one unit. $60 in intake/carb gaskets and an afternoons work every time it comes on and off.
One thing I did not remove when I cleaned the carbs was the fuel mixture screw. These engines are "ultra low emission" variants which I have come discover means that there is a special cap "glued" to the top of the fuel mixture screws which prevents them from being turned counter clockwise. According to the Honda shop manual you have to break the tops off the screws, extract them and replace them with new ones, re-adjust them, and then glue another cap on if you want to remove or adjust them
Was hoping this passage would not need to be cleaned as it is just an air passage, should never have been fuel in there. Perhaps this was an invalid assumtion. if I go through this procedure the "ultra low emissions caps" will not be going back on!