Good luck with that, the 50hp four stroke carbed model was not yamahas finest hour. The later ones were better but the earlier ones were a nightmare of linkages, thermo rams and auto chokes etc. They need balancing absolutely correctly to stand a chance of running nicely, and when using a vacuum gauge as you need to, you do not balance the carbs to equal intake vacuums, rather the vacuum either increases or decreases slightly with each carb starting from no1 (I can't remember figures offhand).
When I was a yamaha engineer I remember being very pleased when the early one we used to deal with spat a rod out the side in a rare yamaha mechanical failure meaning I would never have to set up an early one again!
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