Nice boat!
If it were me I would put a 2,000gph pump and just run the tubing straight over the stern, as I don't see a need to put a hole in the boat when the boat is mostly open at the stern. The less sharp bends and connections the faster the water will flow. The port side of the engine dip looks good, but maybe the starboard. I ran mine in with the outboard controls, etc., over the stern and out the back straight, but we have completely different boats. Something like this for a quality hose that doesn't kink. The hose can be made malleable with a heat gun, as it is very stiff, and has a smooth interior for water flow. That cheesy bendy white or black corrugated hose is...not good stuff.
https://www.amazon.com/gp/product/B00ZSYADV4/